Publications

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Date Title Publication
Publication Title Authors Type
2008
The Amine system project: systems biology in practice.
Rául Montañez
Miguel Ángel Medina
José Luis Urdiales
Francisca Sánchez-Jiménez
Chapter
2006
Applying database techniques to the semantic web. Chapter
2006
Services integration and task-scheduling in bioinformatics grids.
Sergio Ramirez
Enrique Andres
Antonio Jose Perez
Oswaldo Trelles Salazar
Chapter
2005
Database technologies on the web
N. Moreno Vergara
Chapter
2003
La web semántica: punto de encuentro.
N. Moreno Vergara
Chapter
2003
Database management issues in the web environment.
M. Moreno Vergara
Chapter
2002
Integrity issues in the web. Beyond distributes databases
Mariemma I. Yagüe del Valle
Chapter
1998
WWW as a distributed deductive database D3web.
Mariemma I. Yagüe del Valle
Chapter
2009
Data integration: introducing semantics Chapter
2009
Semantic web services: towards and appropiate solution to application integration.
Antonio Roa Valverde
Chapter
2016
A New Multi-objective Approach for Molecular Docking Based on RMSD and Binding Energy Chapter
2016
Re-constructing Hidden Semantic Data Models by Querying SPARQL Endpoints Chapter
2008
VSB: the visual semantic browser. LNCS
2008
SD-Core: generic semantic middleware components for the semantic web. LNCS
2006
Distributed execution of workflows.
Oswaldo Trelles
LNCS
2006
Distributed execution of workflows in the INB.
Antonio J. Pérez
Oswaldo Trelles
LNCS
2006
Automated discovery of compositions of services described with separate ontologies.
Antonio Brogi
Sara Corfini
LNCS
2005
Automatic generation of semantic fields for resource discovery in the semantic web.
I. Sanz
R. Berlanga
LNCS
2004
Kreios towards semantic interoperable systems. LNCS
2004
Deep crawling in the semantic web in search of deep knowledge. LNCS
2004
Solving queries over semantically integrated biological data sources. LNCS
1995
Genesis an object-oriented framework for simulation of neural networks models.
Lidia Fuentes
José M. Troya
LNCS
1995
Hybrizing genetic algorithms with branch and bound techniques for the resolution of the TSP.
Carlos Cotta
Antonio J. Nebro
José M. Troya
LNCS
1995
A Genetic algorithm for load balancing in parallel query evaluation for deductive relational databases (and slides).
Enrique Alba
José M. Troya
LNCS
1993
Genetic Algorithms As Heuristics For Optimizing Ann Design.
Enrique Alba
José M. Troya
LNCS
1993
URANO: an object-oriented artificial neural network simulation tool.
L. Fuentes
J. M. Troya
LNCS
1993
Full automatic ann design a genetic approach.
Enrique Alba
José M. Troya
LNCS
1991
Extending an object oriented concurrent logic language for neural network simulation.
José M. Troya
LNCS
2010
SB-KOM: Integration of Pathway Information with BioPax LNCS
2011
ACTAS del 1º Taller sobre la Evolución de la Investigación y la Docencia en Bases de Datos, EIDBD 2007.
Eduardo Mena
Proceedings/Conferences
2002
Taller sobre Integración Semántica de Fuentes de Datos Distribuidas y Heterogéneas, REDBD'2002
Lucio Donaldo Costilla Cabrera
A. Illarramendi
E. Marcos
A. Polo
Proceedings/Conferences
2001
Actas del Taller de trabajo sobre el Impacto de la Tecnología XML en las Bases de Datos, DB&XML'01
Rafael Berlanga
A. Polo
Proceedings/Conferences
2008
Optimizing ontology alignments by using genetic algorithms.
Enrique Alba
Proceedings/Conferences
2008
A Proposal for a consensus interactive amine metabolism database.
F. Sanchez-Jimenez
R. Montañez-Martinez
A. Pino-Angeles
A. Reyes-Palomares
A. Real-Chicharro
M. A. Medina
Proceedings/Conferences
2008
Comparación de fuentes de conocimiento web para su empleo en el matching de ontologías. Proceedings/Conferences
2008
ECQ: a simple query language for the semantic web. Proceedings/Conferences
2008
DBOWL: towards a scalable and persistent OWL reasoner. Proceedings/Conferences
2008
Protopia: a protein-protein interaction tool.
Alejandro Real Chicharro
Iván Ruíz Mostazo
Francisca Sánchez-Jiménez
Miguel Ángel Medina
Proceedings/Conferences
2008
KOMF: the Khaos ontology-based mediation framework. Proceedings/Conferences
2008
A Protégé plugin for storing owl ontologies in relational databases. Proceedings/Conferences
2008
Comparison of textual renderings of ontologies for improving their alignment.
Antonio Polo Marquez
Proceedings/Conferences
2008
DBOWL: persistencia y escalabilidad de consultas y razonamientos en la web semántica. Proceedings/Conferences
2007
Amine System Project: a pilot project for training and development of Systems Biology tools. Biotechnological applications.
F. Sánchez Jiménez
R. Montañez
A. Pino Ángeles
A. Real Chicharro
A. Reyes-Palomares
M. Medina
J. L. Urdiales
F. R. Villatoro
Proceedings/Conferences
2007
Protopia: a new integration tool for integration of information on protein-protein interactions.
A. Real-Chicharro
R. Montañez
I. Morillas
F. Sánchez-Jiménez
M. Medina
Proceedings/Conferences
2007
A Model-Based mediator system for biological data integration.
Raúl Montañez
Almudena Pino Ángeles
Francisca Sánchez Jiménez
Proceedings/Conferences
2007
Ontology visualization in Systems Biology (Posters). Proceedings/Conferences
2007
Selecting inter-related ontologies in the semantic neighbourhood. Proceedings/Conferences
2007
A First step in introducing data semantics in bioinformatics workflow management systems.
Raúl Fernández Santa-Cruz
Proceedings/Conferences
2007
An Integrative effort to understand the anime system relationships to thr light of system biology technologies .
R. Montañez Martínez
A. Pino Ángeles
A. A. Moya García
A. Reyes Palomares
M. M. Rojano
R. Fernández Santacruz
F. Sánchez Jiménez
M. A. Medina-Torres
Proceedings/Conferences
2007
Semantic data integration, a generic point of view. Proceedings/Conferences
2007
Las Bases de datos y la web semántica: ficción o realidad. Proceedings/Conferences
2007
MaF: un marco de trabajo para el alineamiento de ontologías.
A. Polo Márquez
Proceedings/Conferences
2007
Construyendo un mediador basado en ontologías sobre los directorios semánticos.
I. Ruíz-Mostazo
Proceedings/Conferences
2007
Ontology-Based mediation in the amine system project.
Raúl Montañez
Almudena Pino Ángeles
Aurelio A. Moya García
José Luis Urdiales
Francisca Sánchez Jiménez
Proceedings/Conferences
2007
Towards using explicit semantics in life science. Proceedings/Conferences
2007
A Pilot study experience on generating complex ontology instances from scientific bibliographies on real biological domains.
Rafael Berlanga Llavorí
Roxana Danger
Raúl Montañez-Martínez
Mª del Mar Rojano-Muñoz
Francisca Sánchez-Jiménez
Proceedings/Conferences
2006
Enhanced functionalities for forkflow management.
Raúl Fernández Santa Cruz
Johan Karlson
Oswaldo Trelles
Proceedings/Conferences
2006
Taxonomy-Based enhanced service location for the MOWServ client.
Mª del Mar Rojano Muñoz
Oswaldo Trelles
Gonzalo M. Claros Díaz
Proceedings/Conferences
2006
A Survey on disk oriented querying and reasoning on the semantic web. Proceedings/Conferences
2006
Observations on "biogenic amine world" by using the systems biology "eyes".
F. Sánchez Jiménez
R. Montañez
Iván Ruíz-Mostazo
A. A. Moya-García
A. Pino Ángeles
F. Correa Fíz
Mª del Mar Rojano Muñoz
Raúl Fernández Santa Cruz
Carlos Rodríguez Caso
J. L. Urdiales
M. A. Medina
Proceedings/Conferences
2006
Composing semantic web services from different ontologies.
María del Mar Rojano Muñoz
Proceedings/Conferences
2006
Development of biocomputational and functional genomics tools for studies on amine metabolism and physiopathology.
F. Sánchez-Jiménez
J. L. Urdiales
C. Rodríguez-Caso
A. A. Moya-García
R. Montañez
E. Melgarejo
F. Correa Fiz
P. Chaves
I. Ruíz Mostazo
M. M. Rojaño-Muñoz
M. A. Medina
Proceedings/Conferences
2006
Amine system project: database integration using biological ontologies.
Miguel A. Medina
Francisca Sánchez Jiménez
J. L. Urdiales
Gonzalo M. Claros Díaz
Oswaldo Trelles Salazar
Francisco Román Villatoro Machuca
Aurelio A. Moya García
Raúl Montañez Martínez
Proceedings/Conferences
2006
Amine system project.
Miguel Ángel Medina Torres
Francisco Román Villatoro Machuca
Gonzalo M. Claros Díaz
J. L. Urdiales
Oswaldo Trelles Salazar
Francisca Sánchez Jiménez
Proceedings/Conferences
2006
A Prototype for discovering compositions of semantic web services.
Antonio Brogi
Sara Corfini
Proceedings/Conferences
2005
A Design methodology for semantic web database-based systems. Proceedings/Conferences
2005
Arquitectura para la clasificación y composición de servicios web.
María del Mar Rojano Muñoz
Proceedings/Conferences
2005
A Semantic tool for analyzing interaction among transcription factors.
Carlos Rodríguez-Caso
María del Mar Roldán García
Miguel Ángel Medina Torres
Proceedings/Conferences
2005
Bio-Broker a biological data and services mediator system.
Manuel Hidalgo Conde
Oswaldo Trelles
Proceedings/Conferences
2005
Crisol: una plataforma básica para la evaluación de consultas, mediación e interoperabilidad en la web semántica. Proceedings/Conferences
2005
Developing data services.
Daniel Dianes-Mazorra
Proceedings/Conferences
2005
A Tool for storing OWL using database technology. Proceedings/Conferences
2004
KREIOS: hacia la interoperabilidad de aplicaciones en la web semántica. Proceedings/Conferences
2004
Una Revisión del uso de la tecnología de base de datos para la web semántica. Proceedings/Conferences
2004
Adecuación de un modelo de enseñanza superior en modelo de enseñanza virtual.
Hugo Rosales
Rafael Asenjo
Oswaldo Trelles
Proceedings/Conferences
2004
An Open architecture for the dynamics integration of biological data source..
M. Hidalgo-Conde
P. A. de Alarcón
O. Trelles
Proceedings/Conferences
2004
Embedding semantics annotations into dynamic web contents.
Nathalie Moreno-Vergara
Iván Ruíz-Mostazo
Proceedings/Conferences
2004
Integrating biological data source and data analysis tools through mediatiors.
A. J. Pérez
O. Trelles
Proceedings/Conferences
2004
Semantic integration of digital libraries. Proceedings/Conferences
2004
Towards conceptual mediation: a semantic architecture for dynamic integration of heterogeneous databases. Proceedings/Conferences
2003
Anotación semántica de documentos web
Nathalie Moreno Vergara
Proceedings/Conferences
2003
Arquitectura para la integración semántica.
Nathalie Moreno Vergara
Proceedings/Conferences
2003
Storing and querying knowledge in the deep semantic web. Proceedings/Conferences
2003
Distance learning platform for bioinformatics.
N. Moreno-Vergara
Pedro A. de Alarcón
Oswaldo Trelles
Proceedings/Conferences
2003
New methods for organization in the web of data concerning amine-related metabolic and regulatory pathways. Proceedings/Conferences
2003
Database techniques for the semantic web (poster).
Nathalie Moreno Vergara
Proceedings/Conferences
2002
Implicaciones del tipo de Parser en la evaluación de consultas Xquery.
Nathalie Moreno Vergara
Proceedings/Conferences
2002
Compromiso entre expresividad y capacidad de inferencia en lenguajes para el procesamiento de consultas basado en ontologías.
Nathalie Moreno Vergara
Proceedings/Conferences
2002
Esquemas para representar el conocimiento basado en ontologías.
Nathalie Moreno Vergara
Proceedings/Conferences
2002
Integración de bases de datos biológicas sobre la plataforma .net.
Nathalie Moreno Vergara
M. Aguilera
A. J. Pérez
J. García de la Nava Ruíz
O. Trelles Salazar
Proceedings/Conferences
2002
Mediación semántica entre fuentes de datos heterogéneas en biología.
Pedro A. de Alarcón
Alberto D. Pascual-Montano
Mónica Chagoyen
Amarnath Gupta
José M. Carazo
Oswaldo Trelles
Proceedings/Conferences
2002
Metadata functionality for semantic web integration.
Nathalie Moreno Vergara
A. J. Nebro
Proceedings/Conferences
2002
Global-as-view to local-as-materialized-view (GAV2LAMV) integración por esquema intermedio. Proceedings/Conferences
2010
DBTech EXT: Education and Hands-On Training for the Database Professional.
Martti Laiho
Dimitrios Dervos
Fritz Laux
Proceedings/Conferences
2010
A Data Warehouse Approach to Semantic Integration of Pseudomonas Data.
Kamar Marrakchi
Abdelaali Briache
Mohamed Ettayebi
Khalid Lairini
Badr Din Rossi Hassani
Proceedings/Conferences
2010
Statistical Study about Existing OWL Ontologies from a Significant Sample as Previous Step for their Alignment.
Enrique Alba
Proceedings/Conferences
2009
Semantic Fields: Finding Ontology Relationships. Proceedings/Conferences
2009
Complete OWL-DL Reasoning Using Relational Databases. Proceedings/Conferences
2009
Boosting Annotated Web Services in SAWSDL.
Antonio J. Roa-Valverde
Proceedings/Conferences
2009
Semantically Enhanced Recommender Systems. Proceedings/Conferences
2009
Structural kinetic modeling of polyamine metabolism in mammals
Francisco R. Villatoro
Miguel A. Medina
Francisca Sánchez Jiménez
Proceedings/Conferences
2009
MaSiMe: A Customized Similarity Measure and Its Application for Tag Cloud Refactoring. Proceedings/Conferences
2008
SD-Core: generic semantic middleware components for the semantic web. Proceedings/Conferences
2008
SD-Core: A Semantic Middleware Applied to Molecular Biology. Proceedings/Conferences
2008
Extending ESB for Semantic Web Services Understanding.
Antonio J. Roa Valverde
Proceedings/Conferences
2008
A Semantic Mediation Architecture for RDF Data Integration Proceedings/Conferences
2009
Un Editor de Modelos OWL-S: OWL-S Modeller Proceedings/Conferences
2009
Una propuesta para la anotación semiautomática de servicios web usando SAWSDL.
Antonio J. Roa Valverde
Proceedings/Conferences
2009
Semantic ESB: a scalable platform for semantic web services execution
Antonio J. Roa Valverde
Proceedings/Conferences
2010
More Specific Events Classification to Improve Crawling Techniques Proceedings/Conferences
2011
YeastMed: an XML-Based System for Biological Data Integration of Yeast CoRR Proceedings/Conferences
2014
BM2LOD: Platform For Publishing Bibliographic Data As Linked Open Data
Liudmila Reyes-Alvarez
Yusniel Hidalgo-Delgado
Amed Leiva-Mederos
Proceedings/Conferences
2014
Exploring Incremental Reasoning Approaches based on Module Extraction
Liudmila Reyes-Alvarez
Yusniel Hidalgo Delgado
Proceedings/Conferences
2011
Bioqueries: a Social Community for SPARQL queries in Life Sciences Proceedings/Conferences
2011
Bioqueries: A Social Community Sharing Experiences while Querying Biological Linked Data Proceedings/Conferences
2015
Docking Inter/Intra-Molecular Mediante Metaheurísticas Multi-objetivo Proceedings/Conferences
2016
Bioqueries: a collaborative environment to create, explore and share SPARQL queries in Life Sciences Proceedings/Conferences
2016
kpath: An example of metabolic pathway data integration using Linked Data
Armando Reyes-Palomares
Miguel Ángel Medina
Proceedings/Conferences
2016
Un framework para Big Data Optimization basado en jMetal y Spark
José A. Cordero
Juan J. Durillo
Proceedings/Conferences
2016
Dynamic Multi-Objective Optimization With jMetal and Spark: a Case Study
José A. Cordero
Juan J. Durillo
Proceedings/Conferences
2017
Multi-Objective Big Data Optimization with jMetal and Spark Proceedings/Conferences
2016
A Study of Archiving Strategies in Multi-objective PSO for Molecular Docking Proceedings/Conferences
2008
Interoperability with Moby 1.0 - It´s better than sharing your thothbrush.
The BioMoby Consortium
Journal
2008
AMMO-Prot: amine system project 3D-model finder.
Raúl Montañez
Almudena Pino-Ángeles
Aurelio A. Moya-García
José Luis Urdiales
Francisca Sánchez-Jiménez
Journal
2007
Information integration of protein-protein interactions as essential tools for immunomics.
Raúl Montañéz
Miguel Ángel Medina
Francisca Sánchez-Jiménez
Journal
2007
The Usefulness of post-genomics tools for characterization of the amine cross-talk in mammalian cells.
F. Sánchez-Jiménez
R. Montañez
F. Correa-Fiz
P. Chaves
C. Rodríguez-Caso
J. L. Urdiales
M. A. Medina
Journal
2007
Polyamines: metabolism to systems biology and beyond.
Francisca Sánchez-Jiménez
Miguel Ángel Medina Torres
Raúl Montañez-Martínez
Journal
2007
Amine System Project
Francisco Román Villatoro Machuca
Oswaldo Trelles Salazar
Miguel Ángel Medina Torres
Gonzalo M. Claros-Díaz
Francisca Sánchez-Jiménez
J. L. Urdiales
Journal
2006
Intelligent client for integrating bioinformatics services.
María del Mar Rojano Muñoz
Antonio Jesús Perez Pulido
Oswaldo Trelles Salazar
Journal
2006
Bio-Broker: a Tool for integration of biological data sources and data analysis tools.
Manuel Roldán Castro
Oswaldo Trelles Salazar
Manuel Hidalgo Conde
Journal
2004
A Distributed semantic mediation architecture Journal
2004
Musa-k a practical step to integrate databases and semantic web technologies.
Nathalie Moreno Vergara
Journal
2004
Using knowledge for enhancing queries in the semantic web. Journal
2003
Putting the semantic web to work with Db technology.
Nathalie Moreno Vergara
Journal
2002
Querying the semantic web: feasibility issues.
Nathalie Moreno Vergara
Journal
2002
Interrogare il semantic web.
Nathalie Moreno Vergara
Journal
2002
Viabilidad práctica de la evalucación de consultas en la web semántica.
Nathalie Moreno Vergara
Journal
1999
Bases De Datos Y La Web.
Mariemma I. Yagüe del Valle.
Journal
1999
Consultas Sobre La Web.
Mariemma I. Yagüe del Valle.
Journal
2011
Evaluation of two Heuristic Approaches to Solve the Ontology Meta-Matching problem. Journal
2012
An Overview of Current Ontology Meta-Matching Solutions Journal
2011
Social pathway annotation: extensions of the systems biology metabolic modelling assistant.
Alejandro Real Chicharro
Miguel Ángel Medina Torres
Francisca Sánchez Jiménez
Journal
2009
KA-SB: from data integration to large scale reasoning Journal
2009
Protopia: a protein-protein interaction tool.
Alejandro Real Chicharro
Iván Ruiz Mostazo
Francisca Sánchez Jiménez
Miguel Angel Medina
Journal
2009
Extending SD-Core for Ontology-based Data Integration Journal
2009
Systems biology metabolic modeling assistant: an ontology-based tool for the integration of metabolic data in kinetic modeling.
Armando Reyes Palomares
Raúl Montañez
Alejando Real Chicharro
Miguel Angel Medina
Francisca Sánchez-Jiménez
Journal
2009
Towards a Scalable Infrastructure for Semantic Web Services Execution.
Antonio J. Roa-Valverde
Journal
2009
Innovative unity in the diversity of information management skills teaching and training across europe
Juan J. Farfán Leiva
Fritz Laux
Dimitris A. Dervos
Journal
2011
Reverse Ontology Matching Journal
2012
Transparent mediation-based access to multiple yeast data sources using an ontology driven interface Journal
2013
Sharing and executing linked data queries in a collaborative environment Journal
2014
BioSStore: A Client Interface for a Repository of Semantically Annotated Bioinformatics Web Services Journal
2013
iNGS: a prototype tool for genome interpretation and annotation Journal
2014
jMetalCpp: optimizing molecular docking problems with a C++ metaheuristic framework Journal
2014
Integrating a multi-objective optimization framework into a structural design software
Gustavo R. Zavala
Francisco Luna
Juan J. Durillo
Journal
2015
Solving molecular flexible docking problems with metaheuristics: A comparative study Journal
2011
jMetal: A Java framework for multi-objective optimization
Juan J. Durillo
Journal
2015
Solving Molecular Docking Problems with Multi-Objective Metaheuristics Journal
2015
kpath: integration of metabolic pathway linked data
Armando Reyes Palomares
Miguel Ángel Medina Torres
Journal
2014
Calculating semantic relatedness for biomedical use in a knowledge-poor environment Journal
2016
Fine Grain Sentiment Analysis with Semantics in Tweets
José A. Cordero
Juan J. Durillo
Journal
2016
Dione: An OWL representation of ICD-10-CM for classifying patients’ diseases Journal
2016
Molecular Docking Optimization in the Context of Multi-Drug Resistant and Sensitive EGFR Mutants Journal